# Publications

[1] I. V. Adamovich, T. Li, and W. R. Lempert. Kinetic mechanism of molecular energy transfer and chemical reactions in low-temperature air-fuel plasmas. Philosophical Transactions of the Royal Society A, 373:20140336, 2015.

[2] A. Alberti, A. Munafo, A. Sahai, C. Pantano, and M. Panesi. FEM simulation of laser induced plasma breakdown experiments for combustion applications. AIAA Paper 2017-1111, 2017. 55th AIAA Aerospace Sciences Meeting.

[3] E. Baratte, I. V. Adamovich, M. Simeni Simeni, and K. Frederickson. Measurements of electric field in a nanosecond pulse discharge by 4-wave mixing. In 72nd International Symposium on Molecular Spectroscopy, pages 19-23, 2017.

[4] N. N. Beams, L. N. Olson, and J. B. Freund. A scalable fast method for n-body problems based on exact finite element basis screen functions. SIAM J. Sci. Comp., 38(3):A1538-A1560, 2016.

[5] D. Buchta, R. Vishnampet, D. J. Bodony, and J. B. Freund. A discrete adjoint-based shape optimization for shear-layer-noise reduction. AIAA Paper 2016-2776, 2016.

[6] Y. c. Hung, C. Winters, E. Jans, K. Frederickson, and I. V. Adamovich. N2 vibrational temperature and oh number density measurements in a ns pulse discharge hydrogen-air plasmas. In 72nd International Symposium on Molecular Spectroscopy, pages 19-23, Illinois, 2017.

[7] J. Capecelatro, D. J. Bodony, and J. B. Freund. Adjoint-based sensitivity analysis of ignition in a turbulent reactive shear layer. AIAA Paper 2017-0846, 2017.

[8] J. Capecelatro, R. Vishnampet, T. Wada, N. Glumac, G. Elliot, D. Bodony, and J. B. Freund. Adjoint-based sensitivity analysis of localized ignition in a non-premixed hydrogen/ air mixing layer. 54th AIAA Aerospace Sciences Meeting (SciTech 2016). AIAA Paper 2016-2153, Janurary 2016.

[9] L. Chang, I. El Hajj, H. Kim, J. Gomez-Luna, A. Dakkak, and W. Hwu. A programming system for future proofing performance critical libraries. PPoPP, 2016.

[10] L. Chang, H. Kim, andW. Hwu. DySel: Lightweight dynamic selection for kernel-based data-parallel programming model. ASPLOS, 2016.

[11] K. Das, J. B. Freund, and H. T. Johnson. Mechanisms of material removal and mass transport in focused ion beam nanopore formation. J. App. Phys., 117:085304, 2015.

[12] K. Das, J. B. Freund, and H. T. Johnson. Erosive-thermal transition in high-flux focused ion beam nanomachining of surfaces. Extreme Mechanics Letters, 7:121-125, 2016.

[13] K. Das, H. T. Johnson, and J. B. Freund. Atomic-scale thermocapillary flow in focused ion beam milling. Phys. Fluids, 27:052003, 2015.

[14] Matthias Diener, Sam White, and Laxmikant V. Kale. Visualizing, measuring, and tuning adaptive mpi parameters. In Proceedings of the Fourth International Workshop on Visual Performance Analysis, VPA, 2017.

[15] Matthias Diener, Sam White, Laxmikant V. Kale, Michael Campbell, Daniel J. Bodony, and Jonathan B. Freund. Improving the memory access locality of hybrid mpi applications. In Proceedings of the 24th European MPI Users’ Group Meeting, EuroMPI, 2017.

[16] Z. Eckert. Energy Transfer in Non-Equilibrium Reacting Gas Flows: Applications in Plasma Assisted Combustion and Chemical Gas Lasers. PhD thesis, Ohio State University, 2017.

[17] R. A. Fontaine, J. E. Retter, J. B. Freund, N. G. Glumac, and G. S. Elliott. Ignition, sustained ame, and extinction of a dielectric-barrier-discharge altered hydrogen jet in a cross- flow. 54th AIAA Aerospace Sciences Meeting (SciTech 2016). AIAA Paper 2016-0453, January 2016.

[18] K. Frederickson, E. Jans, M. Huang, I. Gulko, T. A. Miller, and I. V. Adamovich. Measurements of radical and metastable species in nonequilibrium plasmas by cavity ring-down spectroscopy. AIAA Paper2018-0687 AIAA Aerospace Sciences Meeting, Kissimmee, FL, 2018.

[19] J. B. Freund and R. H. Ewoldt. Quantitative rheological model selection: Good ts versus credible models using Bayesian inference. J. of Rheology, 59:667-701, 2015.

[20] S. Garcia De Gonzalo, C. Pearson, I. El Hajj, and W. Hu. Elective use of accelerators. In NCSA Blue Waters Symposium for Petascale Science and Beyond, Sunriver, Oregon,

May 2015.

[21] Simon Garcia De Gonzalo, Simon Hammond, Christian Trott, and Wen-Mei Hwu. Revisiting online autotuning for sparse-matrix vector multiplication kernels on next generation

architectures. In Proceedings of the 19th IEEE International Conference on High Performance Computing and Communications, HPCC’17, 2017.

[22] P. Ghale and H. T. Johnson. Density matrix computations for large systems using SpMVs. Workshop on Materials Computation: data science and multiscale modeling, August 2017.

[23] P. Ghale and H. T. Johnson. A sparse matrix-vector multiplication based algorithm for accurate density matrix computations on systems of millions of atoms. Comp. Phys. Commun., accepted for publication, 2018.

[24] P. Ghale, M. P. Kroonblawd, S. Mniszewski, C. F. A. Negre, R. Pavel, S. Pino, V. Sardeshmukh, G. Shi, and G. Hahn. Task-based parallel computation of the density matrix in quantum-based molecular dynamics using graph partitioning. SIAM J. Sci. Comput., 39, 2017.

[25] P. Ghale, M. P. Kroonblawd, S. Mniszewski, Ch. F. A. Negre, R. Pavel, S. Pino, V. Sardeshmukh, G. Shi, and G. Hahn. Task-based parallel computation of the density matrix in quantum-based molecular dynamics using graph partitioning. Salishan Conference on High Speed Computing, April 2016.

[26] B. Goldberg, I. Shkurenkov, I. V. Adamovich, and W. R. Lempert. Electric field vector measurements in an AC dielectric barrier discharge overlapped with a nanosecond pulse

discharge. Plasma Sources Science and Technology, 25:045008, 2016.

[27] B. M. Goldberg, I. Shkurenkov, I. V. Adamovich, and W. R. Lempert. Electric field measurements in a plane-to-plane AC dielectric barrier discharge with nanosecond pulse discharge enhancement. AIAA Paper 2016-1215, 2016.

[28] B. M. Goldberg, I. Shkurenkov, S. O’Byrne, I. V. Adamovich, and W. R. Lempert. Electric field measurements in a dielectric barrier nanosecond pulse discharge with sub nanosecond

time resolution. 53rd AIAA Aerospace Sciences Meeting (SciTech 2015), AIAA Paper 2015-0935.

[29] B. M. Goldberg, I. Shkurenkov, S. O’Byrne, I. V. Adamovich, and W. R. Lempert. Electric field measurements in a dielectric barrier nanosecond pulse discharge with sub-nanosecond time resolution. Plasma Sources Science and Technology, 24:035010, 2015.

[30] B. M. Goldberg, M. Simeni Simeni, C. Zhang, H. Takana, and I. V. Adamovich. Fourwave mixing measurements and kinetic modeling predictions of electric field in a quasi two-dimensional ns pulse discharge in air. In 13th International Conference on Flow Dynamics, pages 10-12, Japan, 2016. October Sendai.

[31] A. Harpale, M. Panesi, and H. B. Chew. Surface-to-bulk diffusion of isolated versus interacting C atoms in Ni(111) and Cu(111) substrates: A first principle investigation. Journal of Chemical Physics: Communication, 142:061101, 2015.

[32] K. L. Heritier, R. L. Jaffe, V. Laporta, and M. Panesi. Energy transfer models in nitrogenplasmas: Analysis of N2-N-e interaction. Journal of Chemical Physics, 141:184302, 2014.

[33] G. Elliott. J. Retter. Investigations on a DBD burner: corrected ltered rayleigh scattering by means of spontaneous raman scattering. AIAA Paper 2018-0933, 2018.

[34] P. Jha and L. Massa. Teaching thermochemical equilibrium using a MATLAB code. Computer in Education Journal, July – September, 2014.

[35] H.-S. Kim, I. El Hajj, J. Stratton, S. Lumetta, and W.-M. Hwu. Locality-centric thread scheduling for bulk-synchronous programming models on CPU architectures. In Code Generation and Optimization (CGO), 2015 IEEE/ACM International Symposium on, pages 257-268, Feb 2015.

[36] Andreas Kleockner. Loo.py: transformation-based code generation for GPUs and CPUs. CoRR, abs/1405.7470, 2014.

[37] Andreas Kloeckner. Loo.py: From Fortran to performance via transformation and substitution rules. Proceedings of ARRAY 2015: ACM SIGPLAN Workshop on Libraries, Languages, and Compilers for Array Programming, June 2015.

[38] R. Knaus and C. Pantano. A computational approach to flame hole dynamics using an embedded manifold approach. Journal of Computational Physics, 296:209-240, 2015.

[39] D. Kotov, H. Yee, M. Panesi, D. Prabhu, and A. Wray. Computational challenges for simulations related to the NASA electric arc shock tube (EAST) experiments. Journal of Computational Physics, 269:215-233, 2014.

[40] Y. Liu, M. Panesi, A. Sahai, and M. Vinokour. Generalized multi-group macroscopic modeling for thermo-chemical non-equilibrium gas mixtures. Journal of Chemical Physics, 142:134109, 2015.

[41] Y. Liu, M. Panesi, A. Sahai, and M. Vinokur. General multi-group macroscopic modeling for thermo-chemical non-equilibrium gas mixtures. Journal Chemical Physics, -:-, 2014. Under Review.

[42] K. Mackay, J. B. Freund, and H. T. Johnson. Poisoning of hydrogen recombination on silica due to water adsorption. J. Phys. Chem. C, 121(30):16366-6372, 2017.

[43] K. K. Mackay, J. B. Freund, and H. T. Johnson. Hydrogen recombination rates on silica from atomic-scale calculations. Journal of Physical Chemistry C, 120:24137- 24147, 2016.

[44] Saeed Maleki, G. Carl Evans, and David A. Padua. Tiled linear algebra a system for parallel graph algorithms. In Proceedings of the 27t International Conference on Languages and Compilers for Parallel Computing, LCPC’14, 2014.

[45] L. Massa and J. B. Freund. An integrated predictive simulation model for the plasmaassisted ignition of a fuel jet in a turbulent cross flow. 54th AIAA Aerospace Sciences Meeting (SciTech 2016). AIAA Paper 2016-2154, Janurary 2016.

[46] L. Massa and J. B. Freund. Plasma-combustion coupling in a dielectric-barrier discharge actuated fuel jet. Comb. and Flame, 184:208-232, 2017.

[47] L. Massa, J. Retter, G. S. Elliott, and J. B. Freund. Plasma-combustion coupling in a dielectric-barrier discharge actuated fuel jet. AIAA Paper 2017-3675, 2017.

[48] L. Massa, J. E. Retter, G. S. Elliott, and J. B. Freund. Dielectric-barrier-discharge plasma-assisted hydrogen diffusion flame. Part 2: Modeling and comparison with experiments. to appear Comb. and Flame, 2018.

[49] L. L. Massa and J. B. Freund. Plasma-combustion coupling in a dielectric-barrier discharge actuated fuel jet. AIAA Paper 2017-0391, 2017.

[50] K. Miki, M. Panesi, and S. Prudhomme. Systematic validation of non-equilibrium thermochemical models using Bayesian inference. Journal Computational Physics, -:-, 2014. Under Review.

[51] K Miki, M. Panesi, and S. Prudhomme. Systematic validation of non-equilibrium thermochemical models using bayesian approach. Journal of Computational Physics, 298:125-144, 2015.

[52] A. Munafo, A. Alberti, C. Pantano, J. B. Freund, and M. Panesi. Modeling of laser induced breakdown phenomena in non-equilibrium plasmas. AIAA Paper 2018-0171, 2018.

[53] A. Munafo, M. Panesi, and T. E. Magin. Boltzmann rovibrational collisional coarsegrained model for internal energy excitation and dissociation in hypersonic flows. Physical Review E, 23:023001, 2014.

[54] M. Natarajan, J. B. Freund, and D. J. Bodony. Actuator election and placement for localized feedback flow control. J. Fluid Mech., 809:775-792, 2016.

[55] M. Natarajan, J. B. Freund, and D. J. Bodony. Control of supersonic jet noise using linear feedback. 22nd AIAA/CEAS Aeroacoustics Conference, AIAA Paper 2016-3055, 2016.

[56] M. Natarajan, J. B. Freund, and D. J. Bodony. Global mode based control of supersonic jet noise. AIAA Paper 2016-3055, 2016.

[57] M. Natarajan, J. B. Freund, and D. J. Bodony. Global mode based control of supersonic jet noise. 8th AIAA Flow Control Conference, AIAA Paper 2016-3258, 2016.

[58] M. Panesi, A. Munafo, T. E. Magin, and R. L. Jae. Non-equilibrium shock-heated nitrogen flows using a rovibrational state-to-state method. Physical Review E, 90:013009, 2014.

[59] V. Petrishchev, Z. Yin, C. Winters, S. B. Leonov, W. R. Lempert, and I. V. Adamovich. Surface charge dynamics and OH and H number density distributions in near-surface nanosecond pulse discharges at a liquid / vapor interface. 53rdAIAA Aerospace Sciences Meeting (SciTech 2015), AIAA Paper 2015-0934, 2015.

[60] Tarun Prabhu and William Gropp. DAME: A runtime-compiled engine for derived datatypes. In Jack J. Dongarra, Alexandre Denis, Brice Goglin, Emmanuel Jeannot, and Guillaume Mercier, editors, Proceedings of the 22nd European MPI Users’ Group Meeting, EuroMPI 2015, Bordeaux, France, September 21-23, 2015, pages 4:1-4:10. ACM, 2015.

[61] A. Reisner, L. N. Olson, and J. D. Moulton. Scaling structured multigrid to 500k+ cores through coarse-grid redistribution. 2017. in review.

[62] J. E. Retter, G. S. Elliott, and S. P. Kearney. Dielectric-barrier-discharge plasma assisted hydrogen diffusion flame. Part 1: Temperature, oxygen, and fuel measurements by one-dimensional fs/ps rotational CARS imaging. to appear Comb. and Flame, 2018.

[63] J. E. Retter, R. A. Fontaine, J. B. Freund, N. G. Glumac, and G. S. Elliott. Coaxial DBD actuator design for control of a hydrogen dissusion flame. 54th AIAA Aerospace Sciences Meeting (SciTech 2016). AIAA Paper 2016-0199, Janurary 2016.

[64] A. Roettgen, I. Shkurenkov, M. Simeni Simeni, I. V. Adamovich, and W. R. Lempert. Time-resolved electron temperature and electron density measurements in a nanosecond pulse lament discharge in H2-He and O2-He mixtures. Plasma Sources Science and Technology, 25:055008, 2016.

[65] A. Roettgen, I. Shkurenkov, M. Simeni Simeni, V. Petrishchev, I. V. Adamovich, and W. R. Lempert. Time-resolved electron density and electron temperature measurements in nanosecond pulse discharges in helium. to appear Plasma Sources Science and Technology, 25:055009, 2016.

[66] A. Roettgen, I. Shkurenkov, M. Simeni Simeni, V. Petrishchev, I. V. Adamovich, and W. R. Lempert. Time-resolved electron density and electron temperature measurements

in nanosecond pulse discharges in helium. Plasma Sources Science and Technology, 25:055009, 2016.

[67] A. Roettgen, I. Shkurenkov, M. Simeni Simeni, V. Petrishchev, I. V. Adamovich, and W. R. Lempert. Time-resolved electron density and electron temperature measurements in nanosecond pulse discharges in helium. Plasma Sources Science and Technology, 25(5):055009, 2016.

[68] M. Simeni Simeni, E. Baratte, C. Zhang, K. Frederickson, I. Adamovich, H. Takana, and H. Nishiyama. Kinetic modeling of high-pressure surface ionization waves generated by ns pulse discharges. In Japan Sendai, editor, 17th International Symposium on Advanced Fluid Information, pages 1-3, November 2017.

[69] M. Simeni Simeni, E. Baratte, C. Zhang, K. Frederickson, and I. V. Adamovich. Ps four-wave mixing measurements of electric field in nanosecond pulse discharges in ambient air, 2018.

[70] M. Simeni Simeni, B. M. Goldberg, C. Zhang, K. Frederickson, W. R. Lempert, and I. V. Adamovich. Electric field measurements in a nanosecond pulse discharge in atmospheric air. Journal of Physics D: Applied Physics, 50:184002, 2017.

[71] M. Simeni Simeni, B. M. Goldberg, C. Zhang, K. Frederickson, W. R. Lempert, and I. V. Adamovich. Electric field measurements in a quasi-two-dimensional ns pulse discharge in atmospheric air. 2017-th AIAA Aerospace Sciences Meeting (SciTech 2017), Grapevine, TX, 2017.

[72] H. Takana, B. M. Goldberg, I. V. Adamovich, and H. Nishiyama. Numerical and experimental analyses of electric led development in high pressure air nanosecond DBD. In 13th International Conference on Flow Dynamics, pages 10-12, Japan, 2016. October Sendai.

[73] K. Tang, L. Massa, J. Wang, and J. B. Freund. A least-squares, adaptive uncertainty propagation approach for a plasma-coupled combustion system. GlobaCOMAS Congress 2016, VII European Congress on Computational Methods in Applied Sciences and Engineering, Greece, 2016.

[74] T. S. F. X. Teixeira, D. Padua, and W. Gropp. A dsl for performance orchestration. In 2017 26th International Conference on Parallel Architectures and Compilation Techniques (PACT), pages 372-372, Sept 2017.

[75] R. Vishnampet, D. B. Bodony, and J. B. Freund. A practical discrete-adjoint method for high fidelity compressible turbulence simulations. J. Comp. Phys., 285:173-192, 2015.

[76] Sam White and Laxmikant V. Kale. Optimizing point-to-point communication between adaptive mpi endpoints in shared memory. In The Workshop on Exascale MPI, ExaMPI, 2017.

[77] C. Winters. Laser Diagnostics of Reacting Molecular Plasmas for Plasma Assisted Combustion Applications. PhD thesis, Ohio State University, 2017.

[78] C. Winters, Y. c. Hung, E. Jans, Z. Eckert, K. Frederickson, I. V. Adamovich, and oh N. Popov. Radical kinetics in hydrogen-air mixtures at the conditions of strong vibrational nonequilibrium. Journal of Physics D: Applied Physics, 50:505203, 2017.

[79] C. Winters, A. Chernukho, Z. Eckert, K. Frederickson, and I. V. Adamovich. Measurements of Ar* and OH number densities in a high-pressure nanosecond pulse discharge. AIAA Paper 2016-1211, January 2016.

[80] C. Winters, Z. Eckert, Z. Yin, K. Frederickson, and I. V Adamovich. Measurements and kinetic modeling of atomic species in fuel-oxidizer mixtures excited by a repetitive nanosecond pulse discharge. Journal of Physics D: Applied Physics, 51:015202, 2018.

[81] C. Winters, Z. Eckert, Z. Yin, K. Frederickson, and I. V Adamovich. Measurements and kinetic modeling of H and O atoms in fuel-oxidizer mixtures excited by a burst of nanosecond pulse discharge. AIAA Paper 2018-1194, 2018.

[82] C. Winters, Y.-C. Hung, E. Jans, K. Frederickson, and I. V. Adamovich. OH radical measurements in hydrogen-air mixtures at the conditions of strong vibrational nonequilibrium. AIAA Paper 2017-1584, 2017.

[83] C. Winters, V. Petrishchev, Z. Yin, W. R. Lempert, and I. V. Adamovich. Surface charge dynamics and OH and H number density distributions in near-surface nanosecond pulse discharges at a liquid / vapor interface. Journal of Physics D: Applied Physics, 48:424002, 2015.

[84] W. Zhang. Performance analysis and optimization of a CFD application. Master’s thesis, University of Illinois at Urbana-Champaign, July 2015.

[85] W. Zhang, D. J. Bodony, J. L. Larson, and L. A. Wilson. ECSS experience: Performance of a CFD code running on Stampede’s Intel Xeon Phi in symmetric mode. In XSEDE 15, St. Louis, MO, July 2015.

[86] W. Zhang, A. Lani, and M. Panesi. Analysis of non-equilibrium phenomena in inductively coupled plasma generators. Physics of Plasmas, 23(7), 2016.